From nabonitaguha at gmail.com Fri Jul 2 08:36:19 2010 From: nabonitaguha at gmail.com (Nabonita Guha) Date: Fri, 2 Jul 2010 08:36:19 -0400 Subject: [Kim-discussion] Error during KIM installation Message-ID: Hi, I would like to request the developers/forum members to help me in resolving an error I'm encountering during KIM 3 installation in ubuntu linux with Java 6. Today I have downloaded KIM 3 from ontotext site. Following is the error I'm getting after issuing the command *./kim start* *nabonita at nabonita-laptop:~/kim-platform-3.0-RC3/bin$ ./kim start KIM_HOME=/home/nabonita/kim-platform-3.0-RC3 KIM_CONTEXT=/home/nabonita/kim-platform-3.0-RC3/context/default KIM_MAX_JAVA_HEAP=1g KIM_LOG_FOLDER=/home/nabonita/kim-platform-3.0-RC3/log ls: cannot access /home/nabonita/kim-platform-3.0-RC3/lib/owlim/*.jar: No such file or directory [INFO] : : : : : : : : KIM SERVER START : : : : : : : : [INFO] OwlimSchemaRepository: 3.3 [INFO] Build date: 06-22-2010 11:57 [INFO] Configured parameter 'imports' to 'kb/owl/owl.rdfs; kb/owl/protons.owl; kb/owl/protont.owl; kb/owl/protonu.owl; kb/owl/kimso.owl; kb/owl/kimlo.owl; kb/skos-owl1-dl.rdf; kb/wkb.nt; kb/wkbx.nt;' [INFO] Configured parameter 'defaultNS' to 'http://www.w3.org/2002/07/owl#; http://proton.semanticweb.org/2006/05/protons#; http://proton.semanticweb.org/2006/05/protont#; http://proton.semanticweb.org/2006/05/protonu#; http://www.ontotext.com/kim/2006/05/wkb#; http://www.ontotext.com/kim/2006/05/wkb#; http://www.ontotext.com/kim/2006/05/wkb#; http://www.ontotext.com/kim/2006/05/wkb#; http://www.ontotext.com/kim/2006/05/wkb#;' [INFO] Configured parameter 'base-URL' to ' http://www.ontotext.com/kim/2006/05/wkb#' [INFO] Configured parameter 'ruleset' to 'kb/KIMRules.pie' [INFO] Configured parameter 'ftsLiteralsOnly' to 'true' [INFO] Configured parameter 'console-thread' to 'false' [INFO] Configured parameter 'entity-index-size' to '400000' [INFO] Configured parameter 'ftsIndexPolicy' to 'onStartup' [INFO] Tokenization regular expression: [\p{L}\d_]+ [INFO] Repository fragments: 1 [INFO] Inferencer threads: 1 [INFO] ftsPolicy = on-startup [INFO] fts: indexing literals only [INFO] Configured parameter 'tuple-index-memory' to '100M' [INFO] Configured parameter 'fts-memory' to '80M' [INFO] Cache pages for tuples: 5241 [INFO] Cache pages for predicates: 0 [INFO] Cache pages for FTS: 4193 [INFO] Configured parameter 'storage-folder' to 'populated' [INFO] KIMService registered on port 1099 [INFO] Configured parameter 'repository-type' to 'file-repository' Compiled: '/home/nabonita/kim-platform-3.0-RC3/context/default/kb/KIMRules.pie' [ERROR] Server Starter thread failed! java.rmi.RemoteException: Error creating repository; nested exception is: java.lang.RuntimeException: Java compiler not found! at com.ontotext.kim.semanticrepository.UnmanagedRepositoryFactory.reconnect(UnmanagedRepositoryFactory.java:44) at com.ontotext.kim.KIMServiceImpl.getSemanticRepositoryAPI(KIMServiceImpl.java:228) at com.ontotext.kim.KIMServiceImpl.getSemanticRepositoryAPI(KIMServiceImpl.java:198) at com.ontotext.kim.KIMServiceImpl$ServerComponentStarter.run(KIMServiceImpl.java:82) Caused by: java.lang.RuntimeException: Java compiler not found! at com.ontotext.trree.rules.RuntimeInferencerCompiler.compileInferencer(RuntimeInferencerCompiler.java:97) at com.ontotext.trree.OwlimSchemaRepository.initialize(OwlimSchemaRepository.java:501) at org.openrdf.repository.sail.SailRepository.initialize(SailRepository.java:84) at com.ontotext.kim.semanticrepository.UnmanagedRepositoryFactory.reconnect(UnmanagedRepositoryFactory.java:40) ... 3 more [INFO] It is now safe to close the KIM Server. [INFO] KIMService unregistered from port 1099 [INFO] It is now safe to close the KIM Server. *At present all files in KIM3 folder are executable, hoping that will resolve this error, but no success :( Looking forward for your help. With best regards Nabonita -- Nabonita JNCASR, Bangalore - 560064 Karnataka, INDIA Email: nabonitaguha at gmail.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From mnozchev at sirma.bg Fri Jul 2 08:55:03 2010 From: mnozchev at sirma.bg (Marin Nozhchev) Date: Fri, 02 Jul 2010 15:55:03 +0300 Subject: [Kim-discussion] Error during KIM installation In-Reply-To: References: Message-ID: <4C2DE1A7.6020109@sirma.bg> Hello Nabonita, KIM 3 requires a Sun / Oracle JDK as stated in the documentation. You cannot use a Java runtime Environment (JRE) or any JDK bundled with your Linux distribution (OpenJDK, GNU JRE). I attached a more detailed annotation guide. Please follow it and tell me if you have any other problems. Best regards, Marin Nozhchev On 02.07.2010 15:36 ?., Nabonita Guha wrote: > Hi, > > I would like to request the developers/forum members to help me in > resolving an error I'm encountering during KIM 3 installation in > ubuntu linux with Java 6. Today I have downloaded KIM 3 from ontotext > site. Following is the error I'm getting after issuing the command > *./kim start* > > *nabonita at nabonita-laptop:~/kim-platform-3.0-RC3/bin$ ./kim start > KIM_HOME=/home/nabonita/kim-platform-3.0-RC3 > KIM_CONTEXT=/home/nabonita/kim-platform-3.0-RC3/context/default > KIM_MAX_JAVA_HEAP=1g > KIM_LOG_FOLDER=/home/nabonita/kim-platform-3.0-RC3/log > ls: cannot access /home/nabonita/kim-platform-3.0-RC3/lib/owlim/*.jar: > No such file or directory > [INFO] : : : : : : : : KIM SERVER START : : : : : : : : > [INFO] OwlimSchemaRepository: 3.3 > [INFO] Build date: 06-22-2010 11:57 > [INFO] Configured parameter 'imports' to 'kb/owl/owl.rdfs; > kb/owl/protons.owl; > kb/owl/protont.owl; > kb/owl/protonu.owl; > kb/owl/kimso.owl; > kb/owl/kimlo.owl; > kb/skos-owl1-dl.rdf; > kb/wkb.nt; > kb/wkbx.nt;' > [INFO] Configured parameter 'defaultNS' to > 'http://www.w3.org/2002/07/owl#; > http://proton.semanticweb.org/2006/05/protons#; > http://proton.semanticweb.org/2006/05/protont#; > http://proton.semanticweb.org/2006/05/protonu#; > http://www.ontotext.com/kim/2006/05/wkb#; > http://www.ontotext.com/kim/2006/05/wkb#; > http://www.ontotext.com/kim/2006/05/wkb#; > http://www.ontotext.com/kim/2006/05/wkb#; > http://www.ontotext.com/kim/2006/05/wkb#;' > [INFO] Configured parameter 'base-URL' to > 'http://www.ontotext.com/kim/2006/05/wkb#' > [INFO] Configured parameter 'ruleset' to 'kb/KIMRules.pie' > [INFO] Configured parameter 'ftsLiteralsOnly' to 'true' > [INFO] Configured parameter 'console-thread' to 'false' > [INFO] Configured parameter 'entity-index-size' to '400000' > [INFO] Configured parameter 'ftsIndexPolicy' to 'onStartup' > [INFO] Tokenization regular expression: [\p{L}\d_]+ > [INFO] Repository fragments: 1 > [INFO] Inferencer threads: 1 > [INFO] ftsPolicy = on-startup > [INFO] fts: indexing literals only > [INFO] Configured parameter 'tuple-index-memory' to '100M' > [INFO] Configured parameter 'fts-memory' to '80M' > [INFO] Cache pages for tuples: 5241 > [INFO] Cache pages for predicates: 0 > [INFO] Cache pages for FTS: 4193 > [INFO] Configured parameter 'storage-folder' to 'populated' > [INFO] KIMService registered on port 1099 > [INFO] Configured parameter 'repository-type' to 'file-repository' > Compiled: > '/home/nabonita/kim-platform-3.0-RC3/context/default/kb/KIMRules.pie' > [ERROR] Server Starter thread failed! > java.rmi.RemoteException: Error creating repository; nested exception is: > java.lang.RuntimeException: Java compiler not found! > at > com.ontotext.kim.semanticrepository.UnmanagedRepositoryFactory.reconnect(UnmanagedRepositoryFactory.java:44) > at > com.ontotext.kim.KIMServiceImpl.getSemanticRepositoryAPI(KIMServiceImpl.java:228) > at > com.ontotext.kim.KIMServiceImpl.getSemanticRepositoryAPI(KIMServiceImpl.java:198) > at > com.ontotext.kim.KIMServiceImpl$ServerComponentStarter.run(KIMServiceImpl.java:82) > Caused by: java.lang.RuntimeException: Java compiler not found! > at > com.ontotext.trree.rules.RuntimeInferencerCompiler.compileInferencer(RuntimeInferencerCompiler.java:97) > at > com.ontotext.trree.OwlimSchemaRepository.initialize(OwlimSchemaRepository.java:501) > at > org.openrdf.repository.sail.SailRepository.initialize(SailRepository.java:84) > at > com.ontotext.kim.semanticrepository.UnmanagedRepositoryFactory.reconnect(UnmanagedRepositoryFactory.java:40) > ... 3 more > [INFO] It is now safe to close the KIM Server. > [INFO] KIMService unregistered from port 1099 > [INFO] It is now safe to close the KIM Server. > > *At present all files in KIM3 folder are executable, hoping that will > resolve this error, but no success :( > > Looking forward for your help. > > With best regards > > Nabonita > > -- > Nabonita > JNCASR, Bangalore - 560064 > Karnataka, INDIA > Email: nabonitaguha at gmail.com > > > _______________________________________________ > Kim-discussion mailing list > Kim-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/kim-discussion -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Installation.pdf Type: application/pdf Size: 306806 bytes Desc: not available URL: From wolfgang.yang at gmail.com Tue Jul 13 12:35:28 2010 From: wolfgang.yang at gmail.com (Yang Fangkai) Date: Tue, 13 Jul 2010 11:35:28 -0500 Subject: [Kim-discussion] index format of annotated doc Message-ID: Hello, List, I am wondering if there is anyway to manipulate the index of the annotated document (for example, read, or modify)? What is the format of the indexes and where are they stored? Thank you! Best, Fangkai From borislav.popov at ontotext.com Wed Jul 14 05:11:33 2010 From: borislav.popov at ontotext.com (borislav popov) Date: Wed, 14 Jul 2010 12:11:33 +0300 Subject: [Kim-discussion] index format of annotated doc In-Reply-To: References: Message-ID: <167678E8-25C0-4823-8CCA-06D050F6FB53@ontotext.com> Hi Fangkai, until someone more knowledgeable shares his thoughts, take this: - reading the index: this is a basic operation behind every search - so yes. - modify - yes on the granularity of documents, entities and annotations. deeper manipulations of non-atomic artifacts are likely to cause inconsistencies. - format: as we provide multiple types of search, there are different aspects to the index. On one hand you can have a traditional (still altered) FTS index based on Lucene or MG4J; On the other the entire semantic repository with the loaded ontologies and knowledge bases serves as an index. The correspondence between documents, annotations and ontology entities is also an index. let us know more what you need to do and maybe we'll be able to help borislav On Jul 13, 2010, at 7:35 PM, Yang Fangkai wrote: > Hello, List, > > I am wondering if there is anyway to manipulate the index of > the annotated document (for example, read, or modify)? What is the > format of the indexes and where are they stored? Thank you! > > Best, > > Fangkai > _______________________________________________ > Kim-discussion mailing list > Kim-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/kim-discussion From mnozchev at sirma.bg Wed Jul 14 06:56:10 2010 From: mnozchev at sirma.bg (Marin Nozhchev) Date: Wed, 14 Jul 2010 13:56:10 +0300 Subject: [Kim-discussion] index format of annotated doc In-Reply-To: <167678E8-25C0-4823-8CCA-06D050F6FB53@ontotext.com> References: <167678E8-25C0-4823-8CCA-06D050F6FB53@ontotext.com> Message-ID: <4C3D97CA.5030307@sirma.bg> Hi Fangkai, Borislav explained that you can (and should!) modify the index behind the KIM Server using the KIM Server API. We will upload the first documentation draft tomorrow where there is a developer's guide. If you want to know what is the binary format of the indexes, it is also simple to explain. The index has two parts - a BigOWLIM RDF triple repository located in context/default/populated and an Apache Lucene index of all imported documents stored in context/default/populated/index-and-store. Best, Marin On 14.07.2010 12:11 ?., borislav popov wrote: > Hi Fangkai, > until someone more knowledgeable shares his thoughts, take this: > - reading the index: this is a basic operation behind every search - > so yes. > - modify - yes on the granularity of documents, entities and > annotations. deeper manipulations of non-atomic artifacts are likely > to cause inconsistencies. > > - format: as we provide multiple types of search, there are different > aspects to the index. On one hand you can have a traditional (still > altered) FTS index based on Lucene or MG4J; On the other the entire > semantic repository with the loaded ontologies and knowledge bases > serves as an index. The correspondence between documents, annotations > and ontology entities is also an index. > > let us know more what you need to do and maybe we'll be able to help > > borislav > > > On Jul 13, 2010, at 7:35 PM, Yang Fangkai wrote: > >> Hello, List, >> >> I am wondering if there is anyway to manipulate the index of >> the annotated document (for example, read, or modify)? What is the >> format of the indexes and where are they stored? Thank you! >> >> Best, >> >> Fangkai >> _______________________________________________ >> Kim-discussion mailing list >> Kim-discussion at ontotext.com >> http://ontotext.com/mailman/listinfo/kim-discussion > > _______________________________________________ > Kim-discussion mailing list > Kim-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/kim-discussion From wolfgang.yang at gmail.com Wed Jul 14 09:08:31 2010 From: wolfgang.yang at gmail.com (Yang Fangkai) Date: Wed, 14 Jul 2010 08:08:31 -0500 Subject: [Kim-discussion] index format of annotated doc In-Reply-To: <4C3D97CA.5030307@sirma.bg> References: <167678E8-25C0-4823-8CCA-06D050F6FB53@ontotext.com> <4C3D97CA.5030307@sirma.bg> Message-ID: Dear Boris and Marin, Thank you for your information! I will be very interested in reading the developer's guide! Fangkai From mnozchev at sirma.bg Fri Jul 16 08:20:27 2010 From: mnozchev at sirma.bg (Marin Nozhchev) Date: Fri, 16 Jul 2010 15:20:27 +0300 Subject: [Kim-discussion] runtime error as KIM Server is starting In-Reply-To: References: <20100712120658.79977c1ftazv1ls0@webmail.unb.ca> <4C3B35A9.3030206@ontotext.com> <4C3C447F.20005@ontotext.com> <20100713112038.13105wh2372upzk8@webmail.unb.ca> <4C3C76F4.4020909@ontotext.com> <20100713114720.17752s4sokym5p4w@webmail.unb.ca> <4C3D94D6.7050006@ontotext.com> <20100714112359.15862q7xvd4049es@webmail.unb.ca> <4C3DCE4E.8000100@ontotext.com> Message-ID: <4C404E8B.4010009@sirma.bg> Hi Chris, You only need to add a stage to your GATE pipeline that imports new named entities with their canonical name into the KIM Semantic Repository . That can be achieved using the Java RMI API of the KIM Server. Does that work for your usecase ? I'll send the relevant links after we release the full documentation. Best, Marin On 14.07.2010 18:09 ?., Chris Baker wrote: > Hi Marin, > If I understand this correctly our knowledgebase must be instantiated > with > canonical names of all instances that could possibly exist for our > domain model. > In our scenario we instantiate canonical names only when they are > found in the > corpus by text mining. So this is not intuitive to us. > Can you elaborate. > Chris > > On Wed, Jul 14, 2010 at 11:54 AM, Chris Baker > wrote: > > Hi Marin, > Does this mean that we have to create Alias classes into our > own ontology and then map our alias class with ProtonS Alias class ? > Should our Alias class be a subclass of Proton Alias class. > Should we use SameAs or Subclass > I am also concerened that all out synonyms in our gazateer > now need to be represented in our ontology. Bascially an RDF > gazeteer. Is this correct ? > Chris and Alex > On Wed, Jul 14, 2010 at 11:48 AM, Marin Nozhchev > > > wrote: > > Hi Alex, > > The alias definitions and the individual declaration must be > in the same place. In this case, everything should go in your > test ontology. There should be no reason to edit any of the > PROTON files. > > I'm sorry if the documentation confused you to think that the > links between entities and aliases and the aliases should be > added to PROTON System. I CC'ed one of our editor, who will > review the relevant text* > > Hope this helps, > Marin > > * > http://nmwiki.ontotext.com/nmwiki/pmwiki.php/KimDocs-30-EN/ExtendInformationExtraction > > > > On 14.07.2010 17:23 ?., alexk at unb.ca wrote: > > Hi Marin, > > Let' say I have individual indA_1 of the class A. This > individual is included in my test ontology. > > Now I am trying to follow your documentation and have > create individual indA_1a of the class Allias. This > individual is added to the Protons ontology. My > unserstanding is that I have connect > indA_1:hasAlias:indA_1a > > The problem is hasAlias:indA_1a belongs to Protons while > indA_1 belongs to our test ontology. > > The ontologies are not connect by import (only by mapping > file). > > So, where I have to place the statement like > indA_1:hasAlias:indA_1a ? > > > Thank you > > Alex > > > > > > Quoting Marin Nozhchev >: > > Hi Alex, > > In the Ontology screen, the line: "A, a List, a > Restriction" means that A is class of type (owl:)List > and (owl:)Restriction. Thus clicking on the > Restriction, thus shows the known metadata about > owl:Restriction. > > The KIM UI doesn't show what restrictions apply to > class A. > > Did I understand you correctly? > > Best, > Marin > > On 13.07.2010 17:47 ?., alexk at unb.ca > wrote: > > Yes, it seems to work now. Thank you. > > Only concern I have at the moment is that I click > on restrictions for class A or B (Ontology screen) > I got a list of data properties that are not in my > Ontology. May be they are inherited? Is it what > expected to be? > > > My next step will be to populate it with instances > and try searching. > > > Quoting Marin Nozhchev > >: > > I tested that visibility file and it is > correct. Please tell me if any other issues > remain after applying the patch. > > Best, > Marin > > On 13.07.2010 17:20 ?., alexk at unb.ca > wrote: > > visibility file attached... > > > Quoting Marin Nozhchev > >: > > Hi Alex, all, > > The attached patch that updates KIM > Platform 3.0-RC3 to 3.0-RC4. Unzip it > in the KIM installation folder, while > the KIM Server and Apache Tomcat (or > other servlet container that you are > using) are stopped. > > I have tested that your test ontology > loads and displays correctly after > patching. You don't need to reset KIM > by deleting populated after patching. > > Best, > Marin > > P.S. Matt, 3.0-RC4 will be available > on the ontotext.com/kim > later today. > On 12.07.2010 18:32 ?., Marin Nozhchev > wrote: > > Hi Alex, All, > > Thank you for reporting the issue. > It looks like this is an issue in > KIM, which fails to account for > RDF blank nodes that appear as a > result of OWL inference over some > ontologies. > > This issue was aggravated by a > recent change in BigOWLIM. We will > fix that immediately, as other > users may experience that too. > I'll send you a patch tomorrow and > the team will put a new release > candidate with the patch for download. > > Best, > Marin > > On 12.07.2010 18:06 ?., > alexk at unb.ca > wrote: > > > Hi Marin, > > We tried to integrate our > ontology with Kim. (It is > about small test ontology, > just to learn how to do it). > We got a Java runtime error as > KIM Server is starting (please > see the error message in the > attachment). The ontology, > mapping and configuration are > also attached. Would you have > a minute to take a look on it? > > Any suggestions? > > Thank you > > Alex > > > Alexandre Kouznetsov, PHD > postdoctoral research scientist > Knowledge Navigation > Infrastructure Team > Dept. Computer Science & > Applied Statistics > University of New Brunswick, > Canada > > tel: 506 6399358 > emails: akouz086 at uottawa.ca > , > alexk at unb.ca > > http://www.unbsj.ca/sase/csas/facultyPage.php?member=Dr.%20Alex%20Kouznetsov > > > > > > > > > > > > > > > > > > > -- > Christopher J. O. Baker Ph. D. > Associate Professor > Dept. Computer Science and Applied Statistics > University of New Brunswick, Canada > http://ca.linkedin.com/in/christopherjobaker > > > > > -- > Christopher J. O. Baker Ph. D. > Associate Professor > Dept. Computer Science and Applied Statistics > University of New Brunswick, Canada > http://ca.linkedin.com/in/christopherjobaker -------------- next part -------------- An HTML attachment was scrubbed... URL: From fkyang at cs.utexas.edu Mon Jul 19 11:34:07 2010 From: fkyang at cs.utexas.edu (Fangkai Yang) Date: Mon, 19 Jul 2010 10:34:07 -0500 Subject: [Kim-discussion] index format of annotated doc In-Reply-To: <4C3D97CA.5030307@sirma.bg> References: <167678E8-25C0-4823-8CCA-06D050F6FB53@ontotext.com> <4C3D97CA.5030307@sirma.bg> Message-ID: Hello, Marin, Could you give me a URL that I can take a look about the API that access the indexes? I didn't find much from the website. Thank you! Fangkai On Wed, Jul 14, 2010 at 5:56 AM, Marin Nozhchev wrote: > ?Hi Fangkai, > > Borislav explained that you can (and should!) modify the index behind the > KIM Server using the KIM Server API. We will upload the first documentation > draft tomorrow where there is a developer's guide. > > If you want to know what is the binary format of the indexes, it is also > simple to explain. The index has two parts - a BigOWLIM RDF triple > repository located in context/default/populated and an Apache Lucene index > of all imported documents stored in > context/default/populated/index-and-store. > > Best, > Marin > > On 14.07.2010 12:11 ?., borislav popov wrote: >> >> Hi Fangkai, >> until someone more knowledgeable shares his thoughts, take this: >> - reading the index: this is a basic operation behind every search - so >> yes. >> - modify - yes on the granularity of documents, entities and annotations. >> deeper manipulations of non-atomic artifacts are likely to cause >> inconsistencies. >> >> - format: as we provide multiple types of search, there are different >> aspects to the index. On one hand you can have a traditional (still altered) >> FTS index based on Lucene or MG4J; On the other the entire semantic >> repository with the loaded ontologies and knowledge bases serves as an >> index. The correspondence between documents, annotations and ontology >> entities is also an index. >> >> let us know more what you need to do and maybe we'll be able to help >> >> borislav >> >> >> On Jul 13, 2010, at 7:35 PM, Yang Fangkai wrote: >> >>> Hello, List, >>> >>> I am wondering if there is anyway to manipulate the index of >>> the annotated document (for example, read, or modify)? What is the >>> format of the indexes and where are they stored? Thank you! >>> >>> Best, >>> >>> Fangkai >>> _______________________________________________ >>> Kim-discussion mailing list >>> Kim-discussion at ontotext.com >>> http://ontotext.com/mailman/listinfo/kim-discussion >> >> _______________________________________________ >> Kim-discussion mailing list >> Kim-discussion at ontotext.com >> http://ontotext.com/mailman/listinfo/kim-discussion > > _______________________________________________ > Kim-discussion mailing list > Kim-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/kim-discussion > From borislav.popov at ontotext.com Tue Jul 20 06:19:07 2010 From: borislav.popov at ontotext.com (borislav popov) Date: Tue, 20 Jul 2010 13:19:07 +0300 Subject: [Kim-discussion] KIM API In-Reply-To: References: Message-ID: Hi Srecko i am forwarding this to the kim-discussion mail list - where i am sure you will get expert help b On Jul 20, 2010, at 11:59 AM, srecko joksimovic wrote: > Mr Borislav, > > I saw your documentation, and I find it very helpful. Unfortunately, > I still have a problem. Maybe this is not a question for you, but I > hope that you might help me to solve this problem. > > I have installed Tomcat, deployed KIM, Sesame, and I can access them > using browser. When I start kim.bat, I see note "KIM Server startup > ended". But I have problem when I try to access KIM Platform using > Java application. I have tried the first example, connecting to KIM > Platform, and I got following exception: > > "Cannot connect to KIMService at 192.168.0.104:1099, because of the > following error: error unmarshalling return; nested exception is: > java.lang.ClassNotFoundException: > org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security > manager: RMI class loader disabled); nested exception is: > java.rmi.UnmarshalException: error unmarshalling return; nested > exception is: java.lang.ClassNotFoundException: > org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security > manager: RMI class loader disabled) stacktrace > [Ljava.lang.StackTraceElement;@911f71 cause > java.rmi.UnmarshalException: error unmarshalling return; nested > exception is: java.lang.ClassNotFoundException: > org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security > manager: RMI class loader disabled)" > > Maybe I did not try hard enough, but I just can not find a solution. > I am sorry for westing your time, but I think that you might help me. > > Best regards, > > Srecko Joksimovic > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From borislav.popov at ontotext.com Tue Jul 20 06:31:25 2010 From: borislav.popov at ontotext.com (borislav popov) Date: Tue, 20 Jul 2010 13:31:25 +0300 Subject: [Kim-discussion] KIM Manage and Ontology Import In-Reply-To: References: Message-ID: <029E620B-4409-4321-B3CB-CD2B1275BF46@ontotext.com> Hi Dominic, the manage button is mainly related to adding RSS sources in case one has configured an RSS aggregator for content accumulation. if you need other type of management - let us know - all the rest is mainly done through configuration files. The password in the manage button is just for protecting the sources on public showcase servers that directly deploy the default kim 3 - the one you've downloaded. I will ask my colleagues to resolve this for you asap. re: ontologies. Owlim is an integral part of KIM. If you would like to extend the ontologies in your installation you have to change the owlim configuration (please refer to the doc). If you access an ontology in GATE (or KIM-GATE) this stays outside of the KIM semantic repository - so have this in mind. after the answers from the team - if you still have issues - please let me know. If a direct contact via skype phone would be more helpful - you're welcome to contact us borislav On Jul 19, 2010, at 6:47 PM, dominic.ressel at uni-hohenheim.de wrote: > > Dear Ontotext-Team, > > > we are a team at the business informatics chair Nr. 2 at the > University of Hohenheim (Germany) and are currently working on a IE > project. > In order to fully benefit from the KIM distribution, we think it > might be necessary that we are able to enter the "manage"-button on > the KIM UI. > For some reason we are being asked to type in a username and a > password, which is unfortunately unknown to us. > > A second problem concerns the import of ontologies and their usage > in KIM-Gate. Is it possible to use plugins like "Ontology_OWLIM2" in > KIM-Gate? > > I hope you can help us with these problems and thanks in advance! > > Best regards > Dominic Ressel > > > > > > ************************************************* > Dominic Ressel > Universit?t Hohenheim > Institut f?r Betriebswirtschaftslehre > Wirtschaftsinformatik 2 (510 O) > ------------------------------------------------------------- > Schwerzstrasse 35 > 70599 Stuttgart > Telefon: +49 (0) 711 459-23785 > Fax: +49 (0) 711 459-22961 > Email: dominic.ressel at uni-hohenheim.de > Web: wi2.uni-hohenheim.de > ************************************************* -------------- next part -------------- An HTML attachment was scrubbed... URL: From naso at sirma.bg Tue Jul 20 07:35:35 2010 From: naso at sirma.bg (Atanas Kiryakov) Date: Tue, 20 Jul 2010 14:35:35 +0300 Subject: [Kim-discussion] [Owlim-discussion] Questions about ontology, sesame and KIM-WEB-UI References: <20100720102520.129090@gmx.net> Message-ID: <38DEBE59D1004378B6CB3B2309A692CD@sirma.int> Dear Dominic I am redirecting your request to KIM-discussion mailing list Cheers Naso ---------------------------------------------------------- Atanas Kiryakov Executive Director of Ontotext AD, http://www.ontotext.com Sirma Group, http://www.sirma.bg Phone: (+359 2) 974 61 44; Fax: 975 3226 ---------------------------------------------------------- There is no mental process that can change the laws of nature or erase facts. The function of consciousness is not to create reality, but to apprehend it. ?Existence is Identity, Consciousness is Identification.? Ayn Rand ----- Original Message ----- From: "Ressel" To: Sent: Tuesday, July 20, 2010 1:25 PM Subject: [Owlim-discussion] Questions about ontology, sesame and KIM-WEB-UI > Hi, > > my name is Dominic and I have several questions concerning KIM. > > 1. Ontology: > a) How can I use the KIM Ontology in KIM-Gate? > n) How can I implement my own ontology in KIM-Gate? > > 2. Sesame: > In version 3.0 RC4 the file "sesame-web-ui.war" is missing in the clients > folder. > a) How can I start the Sesame-Web-UI? > b) How is information about annotated documents from KIM-Gate saved to > SESAME, and how is it retrieved? > > 3. KIM-Web-UI: > How is it possible to enter "Manage"? > > Thanks a lot in advance! > Best regards > Dominic > > -- > GRATIS f?r alle GMX-Mitglieder: Die maxdome Movie-FLAT! > Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01 > _______________________________________________ > OWLIM-discussion mailing list > OWLIM-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/owlim-discussion > From philip.alexiev at sirma.bg Tue Jul 20 09:38:40 2010 From: philip.alexiev at sirma.bg (Philip Alexiev @ sirma) Date: Tue, 20 Jul 2010 16:38:40 +0300 Subject: [Kim-discussion] KIM API In-Reply-To: References: Message-ID: Hi Srecko The class is part of channel_iface_impl_stub-1.0.jar. Make sure you have it in the java classpath of your client. All the best, philip >>> Mr Borislav, >>> >>> I saw your documentation, and I find it very helpful. Unfortunately, I still have a problem. Maybe this is not a question for you, but I hope that you might help me to solve this problem. >>> >>> I have installed Tomcat, deployed KIM, Sesame, and I can access them using browser. When I start kim.bat, I see note "KIM Server startup ended". But I have problem when I try to access KIM Platform using Java application. I have tried the first example, connecting to KIM Platform, and I got following exception: >>> >>> "Cannot connect to KIMService at 192.168.0.104:1099, because of the following error: error unmarshalling return; nested exception is: java.lang.ClassNotFoundException: org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security manager: RMI class loader disabled); nested exception is: java.rmi.UnmarshalException: error unmarshalling return; nested exception is: java.lang.ClassNotFoundException: org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security manager: RMI class loader disabled) stacktrace [Ljava.lang.StackTraceElement;@911f71 cause java.rmi.UnmarshalException: error unmarshalling return; nested exception is: java.lang.ClassNotFoundException: org.openrdf.util.rmirouting.ChannelIfaceImpl_Stub (no security manager: RMI class loader disabled)" >>> >>> Maybe I did not try hard enough, but I just can not find a solution. I am sorry for westing your time, but I think that you might help me. >>> >>> Best regards, >>> >>> Srecko Joksimovic >>> -------------- next part -------------- An HTML attachment was scrubbed... URL: From borislav.popov at ontotext.com Wed Jul 21 11:00:17 2010 From: borislav.popov at ontotext.com (borislav popov) Date: Wed, 21 Jul 2010 18:00:17 +0300 Subject: [Kim-discussion] KIM 3 System Documentation released Message-ID: <8443B513-A9C3-442E-ABA3-091AB53A3907@ontotext.com> Dear all, thanks for supporting our work during the years. As you may know few weeks ago we have released KIM 3 - http://ontotext.com/kim To meet high demand from partners and customers we have released the 3rd generation of KIM with incomplete system documentation and only a startup guide. Although the complexity of the platform and its inter-domain nature, make its deployment and customization a demanding task - many of you prefer to have hands-on experience with it, instead of being satisfied with the public demos: http://ontotext.com/kim/showcases.html We are of course thankful for your interest, and will continue to support your usage of Ontotext technology. The system documentation of KIM 3 is now available from our web site: http://ontotext.com/kim/documentation.html or Getting Started from the menu at http://ontotext.com/kim You can access it directly at http://ontotext.com/kim/doc/KimDocs-3.0-EN/HomePage.html Please use it, but also remember that contacting us and sharing your plans for using KIM can save you a lot of time. thanks and all the best the KIM team From mnozchev at sirma.bg Tue Jul 27 03:43:11 2010 From: mnozchev at sirma.bg (Marin Nozhchev) Date: Tue, 27 Jul 2010 10:43:11 +0300 Subject: [Kim-discussion] Questions about ontology, sesame and KIM-WEB-UI In-Reply-To: <38DEBE59D1004378B6CB3B2309A692CD@sirma.int> References: <20100720102520.129090@gmx.net> <38DEBE59D1004378B6CB3B2309A692CD@sirma.int> Message-ID: <4C4E8E0F.2040203@sirma.bg> Hi Dominic, Here are the answers to your questions: n) How can I implement my own ontology in KIM-Gate? - Follow the instructions in the GATE documentation about their Ontology Language Resource (LR) - http://gate.ac.uk/sale/tao/splitch14.html#sec:ontologies a) How can I use the KIM Ontology in KIM-Gate? - Create an GATE Ontology LR using the context/default/kb/owl/protonu.owl as input. a) How can I start the Sesame-Web-UI? You can't. In KIM 3, we use Sesame 2 which has a different model for remote access, which is incompatible with the old web interface. We are preparing an alternative RDF web interface for the next KIM release. In the mean time, you can use the JMX management for running SeRQL / SPARQL queries using particularly the com.ontotext.kim.client.SemanticRepositoryMgmt management bean. Use jconsole or VisualVM with the MBeans plugin as a JMX client. Both are located in the bin/ folder of your JDK. b) How is information about annotated documents from KIM-Gate saved to SESAME, and how is it retrieved? The semantic annotations from documents is stored according to the protonkm.owl ontology in ontext/default/kb/owl/. Generally, all RDF in Sesame can be accessed programmatically via the SemanticRepositoryAPI (see the developer's guide in the documentation). The DocumentRepositoryAPI provides object-oriented access to the stored documents. Note that only annotations with "inst" and "class" features are considered semantic annotations and only those are stored. The default KIM pipeline produces only semantic annotations. How is it possible to enter "Manage"? I'm sorry we left that undocumented. KIM restricts access to users with the role "kimmanager" to the manage section. The servlet container defines which the users and their roles, so see the documentation of your server about how to create users and assign roles. For Apache Tomcat 6.x, the documentation is here - http://tomcat.apache.org/tomcat-6.0-doc/realm-howto.html#MemoryRealm . Best, Marin On 20.07.2010 14:35 ?., Atanas Kiryakov wrote: > Dear Dominic > > I am redirecting your request to KIM-discussion mailing list > > Cheers > Naso > > ---------------------------------------------------------- > Atanas Kiryakov > Executive Director of Ontotext AD, http://www.ontotext.com > Sirma Group, http://www.sirma.bg > Phone: (+359 2) 974 61 44; Fax: 975 3226 > ---------------------------------------------------------- There is no > mental process that can change the laws of nature or erase facts. > The function of consciousness is not to create reality, but to > apprehend it. > ?Existence is Identity, Consciousness is Identification.? > Ayn Rand > ----- Original Message ----- From: "Ressel" > To: > Sent: Tuesday, July 20, 2010 1:25 PM > Subject: [Owlim-discussion] Questions about ontology, sesame and > KIM-WEB-UI > > >> Hi, >> >> my name is Dominic and I have several questions concerning KIM. >> >> 1. Ontology: >> a) How can I use the KIM Ontology in KIM-Gate? >> n) How can I implement my own ontology in KIM-Gate? >> >> 2. Sesame: >> In version 3.0 RC4 the file "sesame-web-ui.war" is missing in the >> clients folder. >> a) How can I start the Sesame-Web-UI? >> b) How is information about annotated documents from KIM-Gate saved >> to SESAME, and how is it retrieved? >> >> 3. KIM-Web-UI: >> How is it possible to enter "Manage"? >> >> Thanks a lot in advance! >> Best regards >> Dominic >> >> -- >> GRATIS f?r alle GMX-Mitglieder: Die maxdome Movie-FLAT! >> Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01 >> _______________________________________________ >> OWLIM-discussion mailing list >> OWLIM-discussion at ontotext.com >> http://ontotext.com/mailman/listinfo/owlim-discussion >> > > _______________________________________________ > Kim-discussion mailing list > Kim-discussion at ontotext.com > http://ontotext.com/mailman/listinfo/kim-discussion